The dotplot captures in a single picture not only the overall similarity of two sequences, but also the complete set and relative quality of different possible alignments. Any path through the dotplot ...

Researchers developed MassiveFold, an enhanced AlphaFold version optimized for parallel processing, which accelerates protein ...

The search space of the alignment is shown using a Cartesian grid and is proportional to the length of the sequences being compared plus one extra row and column (Figure 1A). Next, the alignment ...

To identify vector sequences, alignments will be prepared between your edited forward and reverse complement sequences and the sequence in the pstblue1vector.txt file. (This file contains the sequence ...

The dotplot is a simple picture that gives an overview of the similarities between two sequences. Less obvious is its close relationship to alignments. The dotplot is a table or matrix. The rows ...